dentist 0.0.1-rc.0
Close assembly gaps using long-reads with focus on correctness.
To use this package, run the following command in your project's root directory:
Manual usage
Put the following dependency into your project's dependences section:
dentist
Close assembly gaps using long-reads with focus on correctness.
Building
git clone https://github.com/a-ludi/dentist.git
cd dentist
dub build
Developer Notes
# run the program for development
dub run -- ARGS...
# run tests
dub test
# clean up
dub clean
Functional Description
TODO
Difficulties
Low Complexity Regions/Repeats
- Low Complexity Regions
ccgcacctcaaatcgtcaccgttgtgtatcgaggggacttatagtgc tcctgtgacatgtcactgttgcggtcgaaccggtcgtgcaatccgac gtcccaatgcccgccgcattaacggtagccatAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAcgc atcaccgatcggggtcggtaataaaaggacaaagttagtgttggcca cgaacttctcacgaataagttccctggttttgcgagggaatgcatct gctaggcgtcactggacacagtgggaaagctgccgggggcga
- Low Complexity Regions
ccgcacctcaaatcgtcaccgttgtgtatcgaggggacttatagtgc
tcctgtgacatgtcAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTccacgagctggag
cctaaaacaattccatgagactggtctaggttacgcagtgtagccgc
atcaccgatcggggtcggtaataaaaggacaaagttagtgttggcca
cgaacttctcacgaataagttccctggttttgcgagggaatgcatct
gctaggcgtcactggacacagtgggaaagctgccgggggcga
- Tandem Repeats
ccgcacctcaaatcgtcaccgttgtgtatcgaggggacttatagtgc
tcctgtgacatgtcactgttgcggtcgTTGTGTATCGAGGGGACTTA
TAGTGCTCCTGTTTGTGTATCGAGGGGACTTATAGTGCTCCTGTTTG
TGTATCGAGGGGACTTATAGTGCTCCTGTTTGTGTATCGAGGGGACT
TATAGTGCTCCTGTTTGTGTATCGAGGGGACTTATAGTGCTCCTGTT
TGTGTATCGAGGGGACTTATAGTGCTCCTGTTTGTGTATCGAGGGGA
CTTATAGTGCTCCTGTaagttccctggttttgcgagggaatgcatct
gctaggcgtcactggacacagtgggaaagctgccgggggcga
- Transposable elements
ccgcacctcaaatcgtcaccgttgtgtatcgaggggacttatagtgc
tcctgtGACATGTCACTGTTGCGGTCGAACCGGTCGTGcaatccgac
gtcccaatgcccgccgcattaacggtagccataGACATGTCACTGTT
GCGGTCGAACCGGTCGTGtagcgcgacaaaaaccccacgagctggag
cctaaaacaattccatgagactggtctaggGACATGTCACTGTTGCG
GTCGAACCGGTCGTGtcgtaaaggtctgtcatagtttgtgtgtgtga
gcggaagtataaacgaaaagaggaccagaaaaGACATGTCACTGTTG
CGGTCGAACCGGTCGTGacagtgggaaagctgccgggggcga
License
This project is licensed under MIT License.
- Registered by A. Ludwig
- 0.0.1-rc.0 released 6 years ago
- a-ludi/dentist
- MIT
- Copyright © 2018, Arne Ludwig <[email protected]>
- Authors:
- Dependencies:
- darg, dstats, string-transform-d, vibe-d:data
- Versions:
-
4.0.0 2022-Sep-14 3.0.0 2021-Dec-09 2.0.0 2021-Jun-21 1.0.2 2021-Apr-26 1.0.1 2021-Feb-22 - Download Stats:
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0 downloads today
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0 downloads this week
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56 downloads total
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- Score:
- 1.3
- Short URL:
- dentist.dub.pm