biod 0.1.0

Bioinformatics library in D (utils for working with SAM, BAM, SFF formats)


To use this package, put the following dependency into your project's dependencies section:

dub.json
dub.sdl

BioD

BioD is a fast and memory efficient bioinformatics library written in the D programming language. BioD aims to:

  • Provide a platform for writing high-performance bioinformatics applications in D. BioD achieves this by:
    • automatic parallelization of tasks where possible for example reading and writing BAM files.
    • reducing the GC overhead by avoiding unnecessary memory allocations
  • Offer support for manipulating common biological data formats.
  • Write clear documented and maintainable codebase.

Usage

See the examples directory for examples and usage.

BioD core
License

This library is licensed under the MIT license. Please see the license file for more details

Citation

Authors: Artem Tarasov, Pjotr Prins

Dependencies: none

Versions:
0.1.0 2016-Jun-14
~master 2017-Apr-18
Show all 2 versions
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