biod ~bio2
Bioinformatics library in D (utils for working with SAM, BAM, SFF formats)
To use this package, run the following command in your project's root directory:
Manual usage
Put the following dependency into your project's dependences section:
BioD
BioD is a fast and memory efficient bioinformatics library written in the D programming language.
BioD aims to:
- Provide a platform for writing high-performance bioinformatics applications in D. BioD achieves this by:
- automatic parallelization of tasks where possible for example reading and writing BAM files
- reducing the GC overhead by avoiding unnecessary memory allocations
- Offer support for manipulating common biological data formats
Install
The current default is to provide the path to the checked out repo to the D-compiler. For example in sambamba we use
DFLAGS = -wi -I. -IBioD -g
Usage
See the examples directory for examples and usage.
BioD is also a crucial part of the sambamba tool.
Contributing
Simply clone the repository on github and put in a pull request.
BioD contributors and support
See contributors. For support use the issue tracker or contact
License
BioD is licensed under the liberal MIT (expat) license.
- Registered by Artem Tarasov
- ~bio2 released 6 years ago
- biod/BioD
- MIT
- Copyright © 2016, BioD developers
- Authors:
- Dependencies:
- undead
- Versions:
-
0.2.3 2019-Jun-01 0.2.2 2019-Mar-16 0.2.1 2018-Oct-04 0.2.0 2018-Sep-15 0.1.0 2016-Jun-14 - Download Stats:
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- Score:
- 2.4
- Short URL:
- biod.dub.pm